ATL_FISHREF_12S_mitochondrial_tree_156sequences.pdf
Mitochondrial tree based on the 12s sequences obtained for altantic fish. This data represent the maximum likelihood phylogenetic tree allowing to assess 1) the clustering of the different sequences generated in this study and their closest sequences recovered through a MegaBLAST on GenBank, 2) the robustness of the clades and 3) the phylogenetic dissimilarities through the branch length of the tree among the different sequences. This tree was built with IQtree2 using the best substitution model found by modelFinder. The robustness of the node was evaluated using 1000 ultra-fast bootstrap (node information indicated on the right of the /) and SH-aLRT procedures (node information indicated on the left of the /), using a hillclimbing nearest neighbor interchange (NNI) search to reduce the risk of overestimating branch supports with ultra-fast Bootstrap caused by too severe model violations.
Informazioni supplementari
| Campo | Valore |
|---|---|
| Data last updated | 29 novembre 2024 |
| Metadata last updated | 29 novembre 2024 |
| Creato | 29 novembre 2024 |
| Formato | |
| Identifier (Permalink) | atlfishref-a-12s-mitochondrial-reference-dataset-for-metabarcoding-atlantic-fish.1833a744-7ab8-4a2b-ba58-eabbc7dc671f |
| Data di pubblicazione | 31 ottobre 2024 |
| Data di modifica | 22 novembre 2024 |
| Lingue | Inglese |
| URL d'accesso | https://www.envidat.ch/dataset/atlfishref-a-12s-mitochondrial-reference-dataset-for-metabarcoding-atlantic-fish/resource/1833a744-7ab8-4a2b-ba58-eabbc7dc671f |
| Licenza (Condizioni d'uso) | Non-commercial Allowed / Commercial Allowed / Reference Required |
| Formato | |
| Copertura | - |
| Documentazione | - |
| Servizio di accesso | - |
| Risoluzione Temporale | - |
| Byte size | 983.790 |
| Datastore active | False |
| Datastore contains all records of source file | False |
| Display name | ATL_FISHREF_12S_mitochondrial_tree_156sequences.pdf |
| Has views | True |
| Id | a03df910-241c-44e2-b9dd-b92ff2ba70ae |
| Identifier | atlfishref-a-12s-mitochondrial-reference-dataset-for-metabarcoding-atlantic-fish.1833a744-7ab8-4a2b-ba58-eabbc7dc671f |
| Issued | 2024-10-31T09:49:47+00:00 |
| Language | ['en'] |
| License | https://opendata.swiss/terms-of-use#terms_by |
| Media type | application/pdf |
| Modified | 2024-11-22T18:24:11+00:00 |
| Package id | 4c1f65a1-cf2c-4f95-be19-1cca7de6f546 |
| Position | 4 |
| Rights | https://opendata.swiss/terms-of-use#terms_by |
| State | active |
| Title | ATL_FISHREF_12S_mitochondrial_tree_156sequences.pdf |
| Uri | https://www.envidat.ch/dataset/atlfishref-a-12s-mitochondrial-reference-dataset-for-metabarcoding-atlantic-fish/resource/1833a744-7ab8-4a2b-ba58-eabbc7dc671f |